Onco home

(Biomedical oncology entity annotators' base page)

Annotators' home

• Annotation concepts (mindware)
  • General guidelines for entity annotation
  • Definitions of entity categories for oncology
  • Reporting errors [2004-12-15]
  • Reference tools
    • Annotation database [2005-05-27]
    • list of Genes and Malignancies (also available as a Word document)
    • Two-way source-ID/PMID index
  • Background reading
  • Pretagging guide
  • Transition into tagging Survival-status and relations
  • Definitions of entities associated with Survival-status (simplified version) [2005-02-03]
  • Redoing HGN 1 (Human Gene Normalization set 1) °
  • Fixup list archive, for historical reference only, in text form. Oct.-Nov. 2004. Discussion of certain fixups necessary to prepare the Dec. 2004 release.
• Annotation tools (software)
  • WordFreak
    • Download/run [2005-03-23]
    • Setup
    • User's guide
    • Chaining in WordFreak
    • Technical support, WordFreak and general: Eric Pancoast (office: 405, directly opposite Mark Mandel's)
  • Public-use PCs at the IRCS
  • File management (checkout/checkin)
    • LAW system web site
  • Training materials [2004-08-16]
  • Relation annotation [2004-10-21]
    • Homepage for relation pilot project [2004-11-04]
    • Wordfreak for relation annotation
    • Relation annotation practice files
    • Relations pilot list archive, for historical reference only, in text form. Oct.-Nov. 2004.
• Staying in touch (anywhere)
  • Mailing list
    • About the mailing list: subscribing, password, member list.
    • Mail to: onco-list@ldc.upenn.edu
    • Read the archives
    • About the Mailman system
  • AIM
  • Personal contact information
• Vital administrivia

CHANGE NOTES

Annotators' home

2006-01-08