Onco home
(Biomedical oncology entity annotators' base page)
Annotators' home
Annotation concepts (mindware)
General guidelines
for entity annotation
Definitions
of entity categories for oncology
Reporting errors
[2004-12-15]
Reference tools
Annotation database
[2005-05-27]
list of
Genes and Malignancies
(also available as a
Word document
)
Two-way source-ID/PMID index
Background reading
Pretagging guide
Transition into tagging Survival-status and relations
Definitions of entities associated with Survival-status
(simplified version)
[2005-02-03]
Redoing HGN 1 (Human Gene Normalization set 1)
°
Fixup list archive
, for historical reference only, in text form. Oct.-Nov. 2004. Discussion of certain fixups necessary to prepare the Dec. 2004 release.
Annotation tools (software)
WordFreak
Download/run
[2005-03-23]
Setup
User's guide
Chaining in WordFreak
Technical support, WordFreak and general:
Eric Pancoast
(office: 405, directly opposite Mark Mandel's)
Public-use PCs at the IRCS
File management (checkout/checkin)
LAW system
web site
Training materials
[2004-08-16]
Relation annotation
[2004-10-21]
Homepage for relation pilot project
[2004-11-04]
Wordfreak for relation annotation
Relation annotation practice files
Relations pilot list archive
, for historical reference only, in text form. Oct.-Nov. 2004.
Staying in touch (anywhere)
Mailing list
About the mailing list
: subscribing, password, member list.
Mail to:
onco-list@ldc.upenn.edu
Read the
archives
About the Mailman system
AIM
Personal contact information
Vital administrivia
CHANGE NOTES
added
Redoing HGN 1
Annotators' home
2006-01-08